Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48235.1Translation elongation factor Tu. (395 aa)    
Predicted Functional Partners:
AEI48240.1
Ribosomal protein L11.
 0.992
AEI48243.1
50S ribosomal protein L7/L12.
 0.989
AEI47123.1
30S ribosomal protein S10.
 0.986
AEI48241.1
Ribosomal protein L1.
 
 0.983
AEI48122.1
Ribosomal protein L2.
 
 0.982
AEI47589.1
Elongation factor Ts.
   
 0.981
AEI48124.1
Ribosomal protein L4/L1e.
 
 0.981
AEI48242.1
50S ribosomal protein L10.
  
 
 0.980
AEI48836.1
Ribosomal protein S12.
 0.980
AEI47592.1
Ribosomal protein L13.
 
 0.979
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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