STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48238.1Preprotein translocase, SecE subunit. (63 aa)    
Predicted Functional Partners:
AEI48240.1
Ribosomal protein L11.
  
 
 0.984
AEI48241.1
Ribosomal protein L1.
  
 
 0.979
AEI48239.1
NusG antitermination factor.
  
  
 0.978
AEI48242.1
50S ribosomal protein L10.
  
 
 0.977
AEI50740.1
Preprotein translocase, SecG subunit.
 
 
 0.976
AEI48490.1
Protein-export membrane protein SecD.
 
 
 0.968
AEI47956.1
50S ribosomal protein L33.
  
 
 0.966
AEI48099.1
Ribosomal protein S4.
  
 
 0.964
AEI48105.1
Preprotein translocase, SecY subunit.
  
 
 0.958
AEI47592.1
Ribosomal protein L13.
  
 
 0.956
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.