Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48240.1Ribosomal protein L11. (147 aa)    
Predicted Functional Partners:
AEI48241.1
Ribosomal protein L1.
 0.999
AEI48243.1
50S ribosomal protein L7/L12.
 
 0.999
AEI48242.1
50S ribosomal protein L10.
 
 0.998
AEI48244.1
DNA-directed RNA polymerase subunit beta.
 
 0.998
AEI48122.1
Ribosomal protein L2.
 
 0.996
AEI48836.1
Ribosomal protein S12.
 
 
 0.996
AEI48109.1
Ribosomal protein L18.
 
 0.995
AEI48110.1
Ribosomal protein L6.
 
 0.995
AEI48115.1
Ribosomal protein L14.
 
 0.995
AEI48239.1
NusG antitermination factor.
 
 0.995
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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