STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48244.1DNA-directed RNA polymerase subunit beta. (1319 aa)    
Predicted Functional Partners:
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
 0.999
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
 
 0.998
AEI48240.1
Ribosomal protein L11.
 
 0.998
AEI48243.1
50S ribosomal protein L7/L12.
 
 0.998
AEI48241.1
Ribosomal protein L1.
 
 0.996
AEI48239.1
NusG antitermination factor.
 
 
 0.995
AEI48119.1
Ribosomal protein S3.
 
 
 0.993
AEI48835.1
Ribosomal protein S7.
 
 
 0.993
AEI47123.1
30S ribosomal protein S10.
 
 
 0.991
AEI48099.1
Ribosomal protein S4.
 
 
 0.991
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.