STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48262.1Protein of unknown function DUF433. (81 aa)    
Predicted Functional Partners:
AEI48300.1
Hypothetical protein.
 
   
 0.756
AEI49099.1
Hypothetical protein.
 
   
 0.736
AEI47192.1
Uncharacterized protein family UPF0150.
  
     0.518
AEI48263.1
Peptidase M1 membrane alanine aminopeptidase.
       0.516
AEI48168.1
Hypothetical protein.
 
   
 0.506
AEI47432.1
Protein of unknown function DUF433.
  
     0.499
AEI47078.1
HEPN domain protein.
  
     0.466
AEI49637.1
Protein of unknown function DUF433.
  
     0.427
Runsl_0751
YcfA family protein.
  
     0.423
AEI47821.1
Protein of unknown function DUF433.
  
     0.423
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.