STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48264.1Cobalamin synthesis protein P47K. (340 aa)    
Predicted Functional Partners:
AEI48265.1
Hypothetical protein.
       0.773
AEI48112.1
30S ribosomal protein S14.
  
 
 0.736
AEI50657.1
TraR/DksA family transcriptional regulator.
  
  
 0.698
AEI48104.1
Methionine aminopeptidase, type I.
    
 
 0.643
AEI48533.1
Methionine aminopeptidase, type I.
    
 
 0.643
AEI47290.1
50S ribosomal protein L28.
  
  
 0.623
AEI47956.1
50S ribosomal protein L33.
  
  
 0.478
AEI51593.1
Methionine synthase.
 
   
 0.456
AEI48263.1
Peptidase M1 membrane alanine aminopeptidase.
       0.417
AEI47271.1
Histidine biosynthesis bifunctional protein hisIE.
     
 0.402
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.