STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48270.1Phytoene desaturase. (500 aa)    
Predicted Functional Partners:
AEI48884.1
Squalene/phytoene synthase.
  
 0.943
AEI49836.1
Protein of unknown function DUF422.
 
   
 0.827
AEI48269.1
MOSC domain containing protein.
       0.773
AEI48423.1
Hypothetical protein.
 
  
 0.719
AEI47808.1
Fatty acid hydroxylase.
 
   
 0.692
AEI48268.1
HAD superfamily (subfamily IA) hydrolase, TIGR02254.
  
    0.573
AEI47822.1
Deoxyribodipyrimidine photo-lyase.
 
  
 0.536
AEI47103.1
Cryptochrome, DASH family.
 
  
 0.454
AEI48271.1
Putative membrane protein.
  
    0.452
AEI48885.1
Phytoene desaturase.
 
    
0.414
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.