STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48282.1Alpha-1,2-mannosidase. (760 aa)    
Predicted Functional Partners:
AEI48682.1
Uncharacterized conserved protein UCP028846.
   
 0.913
AEI48283.1
Hypothetical protein.
       0.645
AEI48246.1
Beta-N-acetylhexosaminidase.
 
   
 0.624
AEI50237.1
Beta-N-acetylhexosaminidase.
 
   
 0.591
AEI46547.1
Alpha-L-fucosidase.
 
   
 0.570
AEI48683.1
Glycoside hydrolase family 29 (alpha-L-fucosidase).
 
   
 0.528
AEI49020.1
Alpha-L-fucosidase.
 
   
 0.526
AEI49018.1
Alpha-L-fucosidase.
 
   
 0.491
AEI49060.1
Endonuclease/exonuclease/phosphatase.
  
     0.468
AEI46689.1
Alpha-N-acetylgalactosaminidase.
  
     0.450
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.