STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48285.1cysteinyl-tRNA synthetase. (511 aa)    
Predicted Functional Partners:
AEI50839.1
Serine O-acetyltransferase.
 
  
 0.988
AEI47281.1
Cysteine synthase B.
  
 
 0.926
AEI46692.1
Methionyl-tRNA synthetase.
 
 
 0.782
AEI48597.1
Arginyl-tRNA synthetase.
 
 
 0.776
AEI50067.1
Histidyl-tRNA synthetase.
  
 
 0.771
AEI50847.1
threonyl-tRNA synthetase.
 
  
 0.767
AEI47487.1
seryl-tRNA synthetase.
 
 
 0.712
AEI51843.1
Triosephosphate isomerase.
 
 
  
 0.694
AEI50040.1
leucyl-tRNA synthetase.
 
 
 0.689
AEI50093.1
Valyl-tRNA synthetase.
 
  
 0.655
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.