STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48293.1Hypothetical protein. (396 aa)    
Predicted Functional Partners:
AEI48294.1
Hypothetical protein.
 
     0.940
AEI47913.1
Protein of unknown function DUF95 transmembrane.
     0.855
AEI51765.1
Protein of unknown function DUF58.
 
    0.831
AEI47912.1
RDD domain containing protein.
 
     0.820
AEI47914.1
Hypothetical protein.
 
     0.819
AEI48292.1
ATPase associated with various cellular activities AAA_3.
 
    0.751
AEI48824.1
Hypothetical protein.
  
     0.613
AEI48058.1
Outer membrane efflux protein.
  
     0.602
AEI48986.1
Anthranilate phosphoribosyltransferase-like protein.
  
     0.465
AEI48295.1
Cytochrome c class I.
       0.436
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.