Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48297.1Regulatory protein recX. (155 aa)    
Predicted Functional Partners:
AEI49566.1
Protein recA.
  
 
 0.936
AEI50182.1
DNA repair protein RadA.
  
  
 0.898
AEI48298.1
Hypothetical protein.
     
 0.762
AEI48486.1
DNA polymerase I.
 
   
 0.561
AEI50478.1
Crossover junction endodeoxyribonuclease ruvC.
 
  
 0.557
AEI48296.1
Major facilitator superfamily MFS_1.
       0.538
AEI48299.1
Protein of unknown function DUF433.
       0.537
AEI48300.1
Hypothetical protein.
       0.537
AEI51657.1
Competence/damage-inducible protein CinA.
     
 0.522
AEI47896.1
DNA repair protein recO.
 
  
 0.477
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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