STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48310.1Riboflavin synthase, alpha subunit. (196 aa)    
Predicted Functional Partners:
AEI48438.1
6,7-dimethyl-8-ribityllumazine synthase.
 
 0.999
AEI48513.1
GTP cyclohydrolase-2.
 
 0.999
AEI49543.1
Riboflavin biosynthesis protein RibD.
  
 0.999
AEI51124.1
Riboflavin biosynthesis protein RibF.
    
 0.929
AEI47329.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
   
 
  0.901
AEI48311.1
Hypothetical protein.
       0.672
AEI48309.1
Glucose-1-phosphate thymidylyltransferase.
       0.558
AEI48312.1
Alpha amylase catalytic region.
  
    0.468
AEI48709.1
Phenylalanyl-tRNA synthetase alpha chain.
 
      0.450
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.