STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48321.1Hypothetical protein. (448 aa)    
Predicted Functional Partners:
AEI47280.1
Membrane-bound dehydrogenase domain protein.
 
     0.929
AEI48323.1
Oxidoreductase domain protein.
 
    0.893
AEI48322.1
Glutamine--scyllo-inositol transaminase.
 
     0.884
AEI46739.1
Lipolytic protein G-D-S-L family.
  
     0.750
AEI46740.1
Membrane-bound dehydrogenase domain protein.
  
     0.746
AEI50593.1
Hypothetical protein.
  
     0.744
AEI51833.1
Protein of unknown function DUF1549.
  
     0.694
AEI51832.1
Protein of unknown function DUF1501.
  
     0.680
AEI48316.1
N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.640
AEI50859.1
Hypothetical protein.
  
     0.602
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.