Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48336.1TonB-dependent receptor plug. (1004 aa)    
Predicted Functional Partners:
AEI48337.1
RagB/SusD domain-containing protein.
 
     0.927
AEI49016.1
RagB/SusD domain-containing protein.
  
     0.767
AEI48935.1
RagB/SusD domain-containing protein.
 
     0.746
AEI49033.1
RagB/SusD domain-containing protein.
 
     0.714
AEI51920.1
RagB/SusD domain-containing protein.
 
     0.704
AEI49694.1
Hypothetical protein.
  
     0.701
AEI51834.1
RagB/SusD domain-containing protein.
 
     0.682
AEI46551.1
Protein of unknown function, membrane YfhO.
  
     0.663
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
     0.661
AEI51241.1
RagB/SusD domain-containing protein.
  
     0.635
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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