STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48351.1Lipoprotein signal peptidase. (277 aa)    
Predicted Functional Partners:
AEI51885.1
Lipoprotein signal peptidase.
     
  0.900
AEI48352.1
Proline dehydrogenase.
       0.786
AEI47896.1
DNA repair protein recO.
 
   
 0.618
AEI49649.1
Protein of unknown function DUF490.
 
     0.613
AEI50463.1
Alanine racemase.
 
  
 0.589
AEI48353.1
3-deoxy-7-phosphoheptulonate synthase.
  
    0.582
AEI46984.1
Hypothetical protein.
 
     0.554
AEI47738.1
Outer membrane lipoprotein carrier protein LolA.
  
   
 0.553
AEI51899.1
Signal peptidase I.
  
   
 0.535
AEI50632.1
Protein of unknown function DUF164.
  
     0.531
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.