STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48352.1Proline dehydrogenase. (402 aa)    
Predicted Functional Partners:
AEI47359.1
Pyrroline-5-carboxylate reductase.
   
 0.933
AEI50165.1
Proline racemase.
    
 0.905
AEI46890.1
Betaine-aldehyde dehydrogenase.
 
 0.854
AEI48351.1
Lipoprotein signal peptidase.
       0.786
AEI47905.1
Delta-1-pyrroline-5-carboxylate dehydrogenase.
 
 0.761
AEI48353.1
3-deoxy-7-phosphoheptulonate synthase.
 
     0.675
AEI49006.1
Aldehyde Dehydrogenase.
 
 
 0.664
AEI48633.1
Hypothetical protein.
  
     0.586
AEI49202.1
Aldehyde Dehydrogenase.
 
 0.443
AEI46494.1
L-aminoadipate-semialdehyde dehydrogenase.
 
 0.439
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.