STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48369.1Protein of unknown function DUF214. (815 aa)    
Predicted Functional Partners:
AEI48392.1
Efflux transporter, RND family, MFP subunit.
 
  0.856
AEI48390.1
Phosphonate-transporting ATPase.
 
 
 0.843
AEI48424.1
Phosphonate-transporting ATPase.
 
 
 0.783
AEI48395.1
Integral membrane sensor signal transduction histidine kinase.
 
     0.777
AEI48370.1
Protein of unknown function DUF214.
 
   
0.609
AEI47569.1
Phosphonate-transporting ATPase.
 
 
 0.583
AEI47571.1
Efflux transporter, RND family, MFP subunit.
  
  0.567
AEI48371.1
Protein of unknown function DUF214.
 
   
0.473
AEI49450.1
Outer membrane efflux protein.
 
  0.419
AEI48394.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
  
     0.410
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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