STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48369.1Protein of unknown function DUF214. (815 aa)    
Predicted Functional Partners:
AEI48390.1
Phosphonate-transporting ATPase.
 
   0.841
AEI48392.1
Efflux transporter, RND family, MFP subunit.
 
   0.821
AEI48424.1
Phosphonate-transporting ATPase.
 
   0.788
AEI48395.1
Integral membrane sensor signal transduction histidine kinase.
 
     0.780
AEI47569.1
Phosphonate-transporting ATPase.
 
   0.588
AEI48370.1
Protein of unknown function DUF214.
 
   
0.583
AEI47571.1
Efflux transporter, RND family, MFP subunit.
 
   0.455
AEI48371.1
Protein of unknown function DUF214.
 
   
0.440
AEI48394.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
  
     0.410
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.