STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48374.1TonB-dependent receptor. (855 aa)    
Predicted Functional Partners:
AEI46896.1
TonB-dependent receptor plug.
  
 
 
0.907
AEI47146.1
TonB-dependent receptor plug.
  
  
 
0.902
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
   
 0.618
AEI48375.1
Hypothetical protein.
 
     0.610
AEI50033.1
Hypothetical protein.
  
     0.567
AEI50032.1
Hypothetical protein.
  
     0.553
AEI51254.1
Hypothetical protein.
  
     0.543
AEI48295.1
Cytochrome c class I.
  
     0.542
AEI47031.1
Hypothetical protein.
  
     0.521
AEI46504.1
Hypothetical protein.
  
     0.512
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.