STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48380.1Protein of unknown function DUF214. (872 aa)    
Predicted Functional Partners:
AEI48390.1
Phosphonate-transporting ATPase.
 
   0.838
AEI48392.1
Efflux transporter, RND family, MFP subunit.
 
   0.821
AEI48424.1
Phosphonate-transporting ATPase.
 
   0.793
AEI48395.1
Integral membrane sensor signal transduction histidine kinase.
 
     0.780
AEI47569.1
Phosphonate-transporting ATPase.
 
   0.607
AEI48381.1
Transcriptional regulator PadR family protein.
       0.603
AEI48379.1
Methyltransferase type 11.
       0.513
AEI49628.1
Phosphonate-transporting ATPase.
 
   0.426
AEI47571.1
Efflux transporter, RND family, MFP subunit.
 
   0.425
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.