STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48382.1Xylose isomerase domain-containing protein TIM barrel. (282 aa)    
Predicted Functional Partners:
AEI48631.1
Oxidoreductase domain protein.
  
    0.743
AEI48630.1
Protein of unknown function DUF1080.
  
     0.662
AEI50415.1
Oxidoreductase domain protein.
 
    0.644
AEI51893.1
Protein of unknown function DUF1080.
 
     0.635
AEI47698.1
Oxidoreductase domain protein.
  
    0.615
AEI48318.1
Oxidoreductase domain protein.
  
    0.612
AEI51038.1
Protein of unknown function DUF1080.
 
     0.595
AEI51247.1
Oxidoreductase domain protein.
  
    0.582
AEI47553.1
Oxidoreductase domain protein.
  
    0.578
AEI50416.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.575
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.