STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48400.1Sigma 54 interacting domain protein. (412 aa)    
Predicted Functional Partners:
AEI48955.1
ATP-dependent Clp protease proteolytic subunit.
 0.998
AEI49238.1
ATP-dependent hsl protease ATP-binding subunit hslU.
 
 
0.844
AEI46686.1
ATP-dependent protease hslV.
 
 
 0.833
AEI49528.1
ATP-dependent metalloprotease FtsH.
 
  
 0.814
AEI51167.1
Anti-sigma H sporulation factor, LonB.
 
 
 0.719
AEI48043.1
ATP synthase subunit beta.
 
   
 0.700
AEI50069.1
Transcription termination factor Rho.
 
  
 0.623
AEI51165.1
10 kDa chaperonin.
 
 
 
 0.607
AEI51166.1
60 kDa chaperonin.
 
 
 0.595
AEI49349.1
RNA binding S1 domain protein.
 
  
 0.584
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.