STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48400.1Sigma 54 interacting domain protein. (412 aa)    
Predicted Functional Partners:
AEI48955.1
ATP-dependent Clp protease proteolytic subunit.
 0.997
AEI49528.1
ATP-dependent metalloprotease FtsH.
  
  
 0.858
AEI48043.1
ATP synthase subunit beta.
 
   
 0.812
AEI51167.1
Anti-sigma H sporulation factor, LonB.
 
 
 0.766
AEI51166.1
60 kDa chaperonin.
 
 0.759
AEI49238.1
ATP-dependent hsl protease ATP-binding subunit hslU.
 
 
0.729
AEI51165.1
10 kDa chaperonin.
 
 
 0.652
AEI47755.1
Bifunctional deaminase-reductase domain protein.
   
 
 0.645
AEI49066.1
Dihydrofolate reductase.
   
 
 0.645
AEI50638.1
Dihydrofolate reductase region.
   
 
 0.645
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.