STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48411.1Superoxide dismutase. (200 aa)    
Predicted Functional Partners:
AEI48116.1
30S ribosomal protein S17.
  
 0.959
AEI50439.1
30S ribosomal protein S16.
   
 0.957
AEI47591.1
Ribosomal protein S9.
  
 0.956
AEI48108.1
Ribosomal protein S5.
   
 0.956
AEI47590.1
Ribosomal protein S2.
   
 0.954
AEI51677.1
30S ribosomal protein S6.
   
 0.952
AEI47123.1
30S ribosomal protein S10.
  
 0.949
AEI48836.1
Ribosomal protein S12.
   
 0.939
AEI50969.1
Ribosomal protein S15.
  
 0.939
AEI48099.1
Ribosomal protein S4.
   
 0.932
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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