STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48412.1CMP/dCMP deaminase zinc-binding protein. (154 aa)    
Predicted Functional Partners:
AEI47271.1
Histidine biosynthesis bifunctional protein hisIE.
   
  
 0.913
AEI51181.1
Glycerate kinase.
 
 
    0.902
AEI46513.1
Uracil-DNA glycosylase.
 
 
 0.805
AEI50640.1
tRNA(Ile)-lysidine synthase.
 
  
 0.777
AEI50117.1
Universal protein YeaZ.
 
  
 0.673
AEI48411.1
Superoxide dismutase.
       0.668
AEI47250.1
Exodeoxyribonuclease III Xth.
  
 
 0.645
AEI51685.1
PhoH family protein.
  
     0.607
AEI51119.1
tRNA pseudouridine synthase A.
 
  
 0.530
AEI49530.1
biotin/acetyl-CoA-carboxylase ligase.
  
    0.504
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.