STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Runsl_2001Peptidase M28. (383 aa)    
Predicted Functional Partners:
AEI48418.1
Hypothetical protein.
       0.746
AEI48986.1
Anthranilate phosphoribosyltransferase-like protein.
  
     0.727
AEI47381.1
ADP-heptose:LPS heptosyltransferase-like protein.
  
     0.652
AEI49271.1
Hypothetical protein.
  
     0.646
AEI50884.1
Hypothetical protein.
  
     0.608
AEI47480.1
Hypothetical protein.
  
     0.605
AEI49153.1
Hypothetical protein.
  
     0.591
AEI47964.1
Hypothetical protein.
  
     0.577
AEI50994.1
Hypothetical protein.
  
     0.540
AEI48462.1
Integral membrane sensor signal transduction histidine kinase.
  
     0.535
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.