STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48426.1Prolipoprotein diacylglyceryl transferase. (287 aa)    
Predicted Functional Partners:
AEI50974.1
Tryptophan synthase alpha chain.
  
    0.847
AEI48921.1
Tryptophan synthase beta chain.
  
    0.820
AEI50068.1
Membrane protein oxaA.
 
  
 0.706
AEI48490.1
Protein-export membrane protein SecD.
 
  
 0.612
AEI48427.1
Hypothetical protein.
 
     0.572
AEI50174.1
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)).
  
    0.513
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
 
    0.501
AEI48425.1
Outer membrane efflux protein.
  
    0.463
AEI48192.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
 
  
 0.455
AEI48424.1
Phosphonate-transporting ATPase.
       0.410
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.