STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48427.1Hypothetical protein. (200 aa)    
Predicted Functional Partners:
AEI51233.1
Hypothetical protein.
  
     0.694
AEI51083.1
Glycoside hydrolase family 39.
  
     0.658
AEI51086.1
Hypothetical protein.
  
     0.655
AEI51085.1
Hypothetical protein.
  
     0.629
AEI48426.1
Prolipoprotein diacylglyceryl transferase.
 
     0.572
AEI50860.1
Hypothetical protein.
  
     0.554
AEI50239.1
OmpA/MotB domain protein.
  
     0.541
AEI51242.1
Hypothetical protein.
  
     0.519
AEI49183.1
Chondroitin AC lyase.
  
     0.450
AEI48374.1
TonB-dependent receptor.
  
     0.443
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.