STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48431.1Hypothetical protein. (1475 aa)    
Predicted Functional Partners:
AEI48127.1
Hypothetical protein.
  
 
  0.701
AEI46478.1
Poly(3-hydroxybutyrate) depolymerase-like protein.
  
     0.689
Runsl_0856
PKD domain containing protein.
  
     0.676
AEI50860.1
Hypothetical protein.
  
     0.654
AEI46538.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
    0.639
AEI48038.1
Anti-sigma-K factor RskA.
  
     0.624
AEI50893.1
Hypothetical protein.
  
     0.601
AEI48986.1
Anthranilate phosphoribosyltransferase-like protein.
  
    0.599
AEI48430.1
Hypothetical protein.
       0.598
AEI48058.1
Outer membrane efflux protein.
  
    0.595
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.