STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48434.1Cell surface receptor IPT/TIG domain protein. (583 aa)    
Predicted Functional Partners:
AEI48433.1
TonB-dependent receptor.
 
     0.910
AEI50890.1
Tetratricopeptide TPR_1 repeat-containing protein.
  
 
 0.841
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
   
 
 0.786
AEI46594.1
Hypothetical protein.
   
   0.724
AEI51560.1
Tetratricopeptide TPR_2 repeat-containing protein.
  
  
 0.677
AEI48435.1
Hypothetical protein.
       0.667
AEI47153.1
Surface antigen (D15).
  
 
 0.554
AEI47206.1
Surface antigen (D15).
  
 
 0.554
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
  
 
 0.554
AEI48797.1
Surface antigen variable number repeat-containing protein.
  
 
 0.554
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.