STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48438.16,7-dimethyl-8-ribityllumazine synthase. (159 aa)    
Predicted Functional Partners:
AEI48310.1
Riboflavin synthase, alpha subunit.
 
 0.999
AEI48513.1
GTP cyclohydrolase-2.
 
 0.999
AEI49543.1
Riboflavin biosynthesis protein RibD.
 
 
 0.990
AEI47584.1
Large conductance mechanosensitive channel protein.
  
  
 0.913
AEI47329.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
     
 0.903
AEI51876.1
Inosine-5'-monophosphate dehydrogenase.
  
 
 0.897
AEI46841.1
S-adenosylmethionine synthase.
  
 
 0.877
AEI51026.1
S-adenosylmethionine synthase.
  
 
 0.877
AEI49565.1
NusB antitermination factor.
  
  
 0.868
AEI47941.1
50S ribosomal protein L21.
   
    0.839
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.