STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48441.1Rhodanese-like protein. (165 aa)    
Predicted Functional Partners:
AEI48440.1
Hypothetical protein.
       0.773
AEI48438.1
6,7-dimethyl-8-ribityllumazine synthase.
  
    0.679
AEI48439.1
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit.
       0.671
AEI49899.1
Rhodanese-like protein.
  
     0.651
AEI49911.1
Rhodanese-like protein.
  
     0.609
AEI47493.1
Rhodanese-like protein.
  
     0.573
AEI47834.1
Protein of unknown function DUF547.
 
     0.546
AEI48442.1
Thiopurine S-methyltransferase.
       0.486
AEI48437.1
Parallel beta-helix repeat-containing protein.
       0.472
AEI47207.1
Glycosyl transferase family 2.
 
     0.444
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.