STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48444.1Allantoinase. (455 aa)    
Predicted Functional Partners:
AEI48187.1
Aspartate carbamoyltransferase.
 0.999
AEI48096.1
Carbamoyl-phosphate synthase, small subunit.
  
 0.987
Runsl_4437
Carbamoyl-phosphate synthase, large subunit.
 
 0.987
AEI47740.1
Dihydroorotate dehydrogenase.
  
 0.982
AEI48211.1
Dihydroorotase, multifunctional complex type.
  
  
 
0.928
AEI51391.1
Allantoinase.
  
  
 
0.903
AEI51538.1
Orotate phosphoribosyltransferase.
 
  
 0.852
AEI48079.1
Orotidine 5'-phosphate decarboxylase.
  
  
 0.828
AEI51181.1
Glycerate kinase.
 
  
 0.709
AEI49735.1
Uracil phosphoribosyltransferase.
  
 
 0.615
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.