STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48456.1Peptidase M15D vanX D-ala-D-ala dipeptidase. (282 aa)    
Predicted Functional Partners:
AEI48796.1
Peptidase M15D vanX D-ala-D-ala dipeptidase.
  
  
 
0.928
AEI48455.1
Hypothetical protein.
       0.718
AEI48454.1
Peptidase M23.
       0.554
AEI48531.1
Protein of unknown function DUF820.
  
     0.466
AEI48457.1
MutS2 protein.
       0.458
AEI50041.1
Protein of unknown function DUF820.
  
     0.452
AEI48718.1
Protein of unknown function DUF820.
  
     0.439
AEI48458.1
Protein of unknown function DUF819.
       0.428
AEI50463.1
Alanine racemase.
     
 0.412
AEI51911.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.