STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48457.1MutS2 protein. (803 aa)    
Predicted Functional Partners:
AEI49011.1
DNA mismatch repair protein mutS.
 
 
0.933
AEI47259.1
DNA mismatch repair protein mutL.
 
  
 0.739
AEI48956.1
Protein of unknown function DUF814.
 
   
 0.724
AEI48099.1
Ribosomal protein S4.
    
   0.722
AEI49247.1
Conserved hypothetical protein CHP00159.
 
     0.711
AEI47394.1
Ribosomal protein L11 methyltransferase.
 
     0.645
AEI48459.1
Glutamate racemase.
     
 0.641
AEI48458.1
Protein of unknown function DUF819.
       0.626
AEI51677.1
30S ribosomal protein S6.
  
 
   0.580
AEI50439.1
30S ribosomal protein S16.
  
 
   0.568
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.