STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48459.1Glutamate racemase. (274 aa)    
Predicted Functional Partners:
AEI48207.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
 
  
 0.960
AEI48791.1
Nucleoside-triphosphatase rdgB.
 
    0.909
AEI50717.1
Glutamate synthase (ferredoxin).
    
 0.904
AEI47152.1
Phosphoribosylformylglycinamidine synthase 1.
     
  0.900
AEI50656.1
Glutamate dehydrogenase (NAD(P)(+)).
  
 
 0.858
Runsl_1927
Glutamate--ammonia ligase.
    
 0.842
AEI49257.1
Glutamate--ammonia ligase.
    
 0.842
AEI51168.1
Aspartate transaminase.
    
 0.824
AEI50503.1
Glutamine synthetase catalytic region.
    
 0.818
AEI46629.1
Alanine dehydrogenase.
    
  0.801
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.