STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48463.1HesB/YadR/YfhF-family protein. (96 aa)    
Predicted Functional Partners:
AEI48033.1
Cysteine desulfurase.
  
 
 0.727
AEI51590.1
Cysteine desulfurase.
  
 
 0.727
AEI48464.1
Hypothetical protein.
       0.638
AEI51891.1
Iron-sulfur cluster assembly accessory protein.
  
     0.603
AEI49438.1
Nitrogen-fixing NifU domain-containing protein.
  
 
 0.572
AEI50026.1
Nitrogen-fixing NifU domain-containing protein.
  
 
 0.572
AEI49963.1
FeS assembly ATPase SufC.
  
 
 0.534
AEI48462.1
Integral membrane sensor signal transduction histidine kinase.
       0.505
AEI51890.1
Nitric oxide dioxygenase.
  
 0.486
AEI49805.1
Ferredoxin.
 
 0.476
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.