STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48468.1UPF0301 protein yqgE. (184 aa)    
Predicted Functional Partners:
AEI47455.1
Ribonucleoside-diphosphate reductase, alpha subunit.
   
 0.950
AEI47244.1
Holliday junction resolvase.
  
  
 0.830
AEI47860.1
DNA polymerase III, beta subunit.
   
 
 0.710
AEI50199.1
Site-specific DNA-methyltransferase (adenine-specific).
   
    0.641
AEI48509.1
Cytoplasmic protein.
   
    0.617
AEI51932.1
Thymidylate synthase.
   
  
 0.593
AEI47340.1
Thymidine kinase.
   
  
 0.544
AEI48467.1
Hypothetical protein.
       0.523
AEI47061.1
Transcriptional regulator, GntR family.
   
    0.476
AEI47418.1
Transcriptional regulator, GntR family.
   
    0.476
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.