STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48485.1Carboxyl-terminal protease. (559 aa)    
Predicted Functional Partners:
AEI46853.1
Tetratricopeptide TPR_2 repeat-containing protein.
   
 
 0.846
AEI48484.1
Thioesterase superfamily protein.
       0.561
AEI51182.1
Peptidoglycan glycosyltransferase.
  
   
 0.554
AEI48486.1
DNA polymerase I.
       0.536
AEI50696.1
Peptidoglycan glycosyltransferase.
  
     0.527
AEI49405.1
Lytic transglycosylase catalytic.
 
  
 0.524
AEI47112.1
Lytic transglycosylase catalytic.
  
  
 0.504
AEI51718.1
Membrane-associated zinc metalloprotease.
 
  
 0.492
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
 
    0.446
AEI51195.1
PpiC-type peptidyl-prolyl cis-trans isomerase.
 
 
 0.444
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.