STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48486.1DNA polymerase I. (951 aa)    
Predicted Functional Partners:
AEI47860.1
DNA polymerase III, beta subunit.
 
 0.990
AEI49566.1
Protein recA.
 
 0.978
AEI49828.1
Metallophosphoesterase.
 
 0.931
AEI47259.1
DNA mismatch repair protein mutL.
   
 0.923
AEI46534.1
Nuclease SbcCD, D subunit.
  
 0.922
AEI47242.1
3'-5' exonuclease, PolB.
  
 0.922
AEI48620.1
Metallophosphoesterase.
  
 0.922
AEI46535.1
SMC domain protein.
  
 0.920
AEI49794.1
Protein translocase subunit secA.
 
  
 0.917
AEI48612.1
ATP-dependent DNA helicase RecQ.
  
 0.913
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.