STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48490.1Protein-export membrane protein SecD. (1029 aa)    
Predicted Functional Partners:
AEI50068.1
Membrane protein oxaA.
  
 0.998
AEI48105.1
Preprotein translocase, SecY subunit.
  
 0.997
AEI49562.1
Preprotein translocase, YajC subunit.
  
 
 0.992
AEI49794.1
Protein translocase subunit secA.
 
 
 0.974
AEI48238.1
Preprotein translocase, SecE subunit.
 
 
 0.968
AEI50740.1
Preprotein translocase, SecG subunit.
   
 0.953
AEI51794.1
Signal recognition particle protein.
  
 
 0.945
AEI47958.1
Signal recognition particle-docking protein FtsY.
  
 
 0.944
AEI48244.1
DNA-directed RNA polymerase subunit beta.
 
  
 0.913
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
  
 
 0.871
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.