STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48494.1anti-FecI sigma factor, FecR. (350 aa)    
Predicted Functional Partners:
AEI48495.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
 
   0.929
AEI48493.1
Secretin/TonB short domain protein.
 
     0.887
AEI50544.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.798
AEI51226.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.778
AEI47427.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.772
AEI47306.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.751
AEI51237.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.726
AEI47313.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.601
AEI46868.1
RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   0.560
AEI46578.1
TonB-dependent receptor.
 
 
 0.523
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.