STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48509.1Cytoplasmic protein. (502 aa)    
Predicted Functional Partners:
AEI50199.1
Site-specific DNA-methyltransferase (adenine-specific).
   
    0.749
AEI46640.1
NAD-dependent deacetylase.
   
    0.710
AEI50402.1
Protein of unknown function DUF1460.
 
     0.656
AEI48468.1
UPF0301 protein yqgE.
   
    0.617
AEI50132.1
ATP-dependent exoDNAse (exonuclease V).
  
     0.595
AEI48508.1
NUDIX hydrolase.
     
 0.552
AEI50903.1
Protein of unknown function DUF349.
  
     0.543
AEI46510.1
Hypothetical protein.
  
     0.538
AEI47554.1
Phosphoribosylformylglycinamidine cyclo-ligase.
  
     0.495
AEI51852.1
Hypothetical protein.
  
     0.488
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.