STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48515.1Spore coat protein CotH. (476 aa)    
Predicted Functional Partners:
AEI48516.1
VTC domain-containing protein.
 
     0.923
AEI48517.1
Hypothetical protein.
 
     0.901
AEI48518.1
Protein of unknown function DUF2490.
       0.707
AEI50575.1
Hypothetical protein.
  
     0.577
AEI49377.1
Conserved repeat domain protein.
  
    0.567
AEI46895.1
Response regulator receiver and SARP domain protein.
  
     0.565
AEI50547.1
RagB/SusD domain-containing protein.
  
    0.452
AEI51338.1
Conserved repeat domain protein.
  
    0.450
AEI48261.1
Hypothetical protein.
 
   
 0.449
AEI51419.1
Conserved repeat domain protein.
  
    0.438
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.