STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48516.1VTC domain-containing protein. (268 aa)    
Predicted Functional Partners:
AEI48517.1
Hypothetical protein.
 
     0.938
AEI48515.1
Spore coat protein CotH.
 
     0.923
AEI48518.1
Protein of unknown function DUF2490.
       0.738
AEI48261.1
Hypothetical protein.
 
     0.733
AEI49377.1
Conserved repeat domain protein.
  
     0.611
AEI46895.1
Response regulator receiver and SARP domain protein.
  
     0.575
AEI50575.1
Hypothetical protein.
  
     0.550
AEI51338.1
Conserved repeat domain protein.
  
     0.545
AEI50630.1
Integrase family protein.
  
     0.484
AEI50627.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.