STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48529.1Endonuclease III. (226 aa)    
Predicted Functional Partners:
AEI49802.1
DNA-(apurinic or apyrimidinic site) lyase.
  
  
 
0.924
AEI47250.1
Exodeoxyribonuclease III Xth.
 0.848
AEI50286.1
ABC-type transporter, periplasmic subunit.
      0.622
AEI46513.1
Uracil-DNA glycosylase.
  
 
 0.592
AEI48486.1
DNA polymerase I.
 
 
 0.589
AEI48530.1
Phosphoserine transaminase.
       0.583
AEI47942.1
DNA-formamidopyrimidine glycosylase.
   
  
 0.528
AEI49288.1
Polyprenyl synthetase.
 
    0.453
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.