STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48534.1D-amino-acid transaminase. (277 aa)    
Predicted Functional Partners:
AEI47057.1
2-isopropylmalate synthase.
 
 0.965
AEI47198.1
Dihydroxy-acid dehydratase.
  
 0.952
AEI46858.1
Aspartate kinase.
  
 
 0.939
AEI47255.1
3-methyl-2-oxobutanoatehydroxymethyltransferase.
    
 0.914
AEI50660.1
Cystathionine gamma-lyase.
   
 0.910
AEI51168.1
Aspartate transaminase.
  
 
 0.907
AEI49519.1
Branched-chain amino acid aminotransferase.
     
 0.900
AEI47193.1
Threonine dehydratase.
  
 0.872
AEI49423.1
Homoserine kinase.
  
 
 0.837
AEI47185.1
(R)-citramalate synthase.
  
 
 0.625
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.