STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48535.1TonB-dependent receptor. (962 aa)    
Predicted Functional Partners:
AEI48536.1
Protein of unknown function, Porph ging.
 
     0.898
AEI49375.1
Surface antigen (D15).
 
 
 0.700
AEI49209.1
Outer membrane protein.
  
 
 0.642
AEI48538.1
Two component transcriptional regulator, winged helix family.
 
     0.624
AEI48537.1
Integral membrane sensor signal transduction histidine kinase.
 
     0.619
AEI48831.1
Protein of unknown function, Porph ging.
 
     0.577
AEI48534.1
D-amino-acid transaminase.
       0.517
AEI48707.1
Ribosomal subunit interface protein.
  
     0.516
AEI50498.1
Hypothetical protein.
  
     0.501
AEI46967.1
3-oxoacid CoA-transferase, B subunit.
   
    0.465
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.