STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48551.1Transcriptional regulator, GntR family. (428 aa)    
Predicted Functional Partners:
AEI47604.1
Carbohydrate kinase, FGGY.
 
   
 0.780
AEI47602.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
     0.688
AEI48606.1
Glycoside hydrolase family 2 sugar binding protein.
 
     0.626
AEI47603.1
Xylose isomerase domain-containing protein TIM barrel.
 
     0.621
AEI49110.1
Helix-turn-helix domain protein.
 
  
 0.544
AEI48550.1
Glycosyl hydrolase family 88.
  
     0.507
AEI48552.1
Two component transcriptional regulator, LytTR family.
       0.503
AEI48908.1
RhaT l-rhamnose-proton symport 2.
 
     0.489
AEI47747.1
Transcriptional regulator with cupin sensor, AraC family.
  
  
 0.476
AEI47976.1
Transcriptional regulator, AraC family.
  
  
 0.476
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.