STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48555.1Permease YjgP/YjgQ family protein. (358 aa)    
Predicted Functional Partners:
AEI50208.1
Sulfate-transporting ATPase.
 
 
 0.990
AEI50970.1
Permease YjgP/YjgQ family protein.
 
 
  0.954
AEI51486.1
ABC transporter related protein.
     
  0.800
AEI47214.1
Queuine tRNA-ribosyltransferase.
 
  
 0.763
AEI48773.1
Outer membrane protein assembly complex, YaeT protein.
 
     0.748
AEI51742.1
Protein of unknown function DUF140.
 
  
 0.741
AEI47854.1
MotA/TolQ/ExbB proton channel.
  
     0.723
AEI48203.1
Hypothetical protein.
  
     0.704
AEI47277.1
(3R)-hydroxymyristoyl-(acyl-carrier- protein)dehydratase.
 
  
 0.651
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
  
   
 0.644
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.