STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI48568.1Glycosyl transferase group 1. (377 aa)    
Predicted Functional Partners:
AEI48567.1
Ion transport protein.
       0.773
AEI48569.1
Fmu (Sun) domain protein.
       0.543
AEI48161.1
Glycosyl transferase group 1.
  
     0.526
AEI48565.1
Hypothetical protein.
       0.495
AEI48566.1
Peptidase S8 and S53 subtilisin kexin sedolisin.
       0.495
AEI47802.1
1,4-alpha-glucan branching enzyme.
   
 0.412
AEI48082.1
Isoamylase N-terminal domain-containing protein.
   
 0.412
AEI48415.1
1,4-alpha-glucan-branching enzyme.
   
 0.412
AEI49568.1
Nucleotide sugar dehydrogenase.
 
  
 0.401
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.