STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI48593.1Sec-independent protein translocase, TatC subunit. (300 aa)    
Predicted Functional Partners:
AEI49403.1
Sec-independent protein translocase protein tatA/E-like protein.
 
 0.998
AEI49351.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
   
 0.826
AEI48592.1
Phosphonate-transporting ATPase.
       0.782
AEI48091.1
Nitrate reductase.
   
 0.748
AEI50225.1
Oxidoreductase alpha (molybdopterin) subunit.
   
 0.748
AEI48490.1
Protein-export membrane protein SecD.
     
 0.506
AEI48595.1
Geranylgeranylglyceryl phosphate synthase.
 
     0.476
AEI49394.1
Translation initiation factor IF-2.
     
 0.445
AEI49577.1
Cytochrome c assembly protein.
 
   
 0.417
AEI48594.1
Hypothetical protein.
       0.404
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.